Anonymous

Changes

Allele definition

180 bytes added, 13:03, 29 August 2018
How to obtain PGx allele definitions from literature
* PGx alleles on JSON-LD format from the [https://api.pharmgkb.org PharmGKB API]
* PGx alleles on Excel-style formats, also accessible through the PharmGKB API (but seems to be hidden from the Swagger documentation)
* [https://github.com/PharmGKB/PharmCAT/tree/master/src/main/resources/org/pharmgkb/pharmcat/definition/alleles PGx alleles for use in PharmCAT] are included in their source code.
* PGx alleles as VCF files from [https://www.pharmvar.org PharmVar]
PGx allele definitions are given in either GRCh37 or GRCh38 reference coordinates. The process of changing from GRCh37 to GRCh38 for PharmGKB seems to be only partially completed (at least in the JSON-LD data).