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Allele definition

78 bytes added, 14:09, 13 September 2018
How to obtain PGx allele definitions from literature
* PGx alleles on JSON-LD format from the [https://api.pharmgkb.org PharmGKB API]
* PGx alleles on Excel-style formats, also accessible through the PharmGKB API (seems to be hidden from the Swagger documentation, but direct links when searching for haplotype definitions at the pharmgkb.org website)
* [https://github.com/PharmGKB/PharmCAT/tree/master/src/main/resources/org/pharmgkb/pharmcat/definition/alleles PGx alleles for use in PharmCAT] are included in their source code. It is reasonable to suspect that these files are parsed from the Excel files.
* PGx alleles as VCF files from [https://www.pharmvar.org PharmVar]