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Bioinformatic pipeline

Outline

  • Integrate pharmacogenomic variant calling in the hospital bioinformatic workflow using Nextflow
  • Packaging the pharmacogenomic variant callers in a Singularity container for increased portability (the Pharmacotyper)
    • Using Aldy for genotyping of genes for absorption, distribution, metabolism, and excretion (ADME).
    • Using xHLA for genotyping of the HLA-gene.
  • Making test for continuous integration of pharmacogenomic variant calling in the pipeline