Pharmacotyper
Revision as of 15:24, 13 July 2018 by Farmakorakel (talk | contribs) (→Pharmacotyper - getting relevant PGx variants from a patient VCF)
Pharmacotyper - getting relevant PGx variants from a patient VCF
The Pharmacotyper is a Python script that extracts relevant variants from a VCF and returns
- allele matching
- Match variants to PGx alleles by custom method. Return list of possible PGx alleles in the nomenclature of the OWL ontology of Pharmacoracle
- haplotype queries
- Return variants in terms of queries to Pharmacoracle
We have coined the verb to pharmacotype for the action of the Pharmacotyper.
