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Pharmacotyper

3 bytes added, 15:24, 13 July 2018
Pharmacotyper - getting relevant PGx variants from a patient VCF
==Pharmacotyper - getting relevant PGx variants from a patient VCF==
The Pharmacotyper is a Python script that extracts relevant variants from a VCF and returns
;allele matching
: Match variants to PGx alleles by custom method. Return list of possible PGx alleles in the nomenclature of the OWL ontology of [[Pharmacoracle]]
;haplotype queries
: Return variants in terms of queries to [[Pharmacoracle]] queries based on the PGx alleles
We have coined the verb ''to pharmacotype'' for the action of the Pharmacotyper.